Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPIANDTQFHTSSFLLLGIPGLEDVHIWIGFPFFSVYLIALLGNAAIFFVIQTEQSLHEPMYYCLAMLDSIDLSLSTATIPKMLGIFWFNIKEISFGGYLSQMFFIHFFTVM--ESIV--LVAMAFDRYIAICKPLWYTMILT-SKIISLIAGIAVLRSLYMVIPLVFLLLRLPFCGHRIIPHTYCEHMGIARLAC---ASIKVNIMFGLGSISLLLLDVLLIILSHIRILYAVFC---------LPSWEAR---LKALNTCGSHIGVILAFSTPAFFSFFTHCFGHDIPQYIHIFLANLYVVV-----PPTLNPVIYGVRTKHIRETVLRIFFKTDH |
| 3VG9 Chain:A ((15-302)) | ----------------------------------AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI------STGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTP----MLGWNNCGQ-------SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VG9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -254869 for 1839 contacts (-138.6/contact) +
2D Compatibility (PS) -26113 + (NN) -6507 + (LL) 3912
1D Compatibility (HY) -24800 + (ID) 3450
Total energy: -311827.0 ( -169.56 by residue)
QMean score : 0.140
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