Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPNMTSIREFILLGFTDNPELQVVIFFFMLITYLLSVSGNMIIIMLTLSNIHLKTPMYFFLRNFSFLEISFTTVFIPRFLINIATGDTTISYNASMAQVFFLILLGSTEFFLLAVMSYDRYVAICKPLHYTTIMSNKVCNWLVISSWLAGFLIIFPPVI-------MGLQL-DFCDSSTIDHFICDSSPMLLIACTDTQFLELMAFLLAVFTLMVTLAL-VVLSYTLILKTILKIPSAQQR-----KKAFSTCSSHMIVVSVSYGSC----------IFMCVKTSAKEGMALSKGVAVLNTSVAPMLNPFIYTLRNQQVKQALREFTKKILSLNKQ |
| 3VG9 Chain:A ((18-304)) | ---------------------------------VLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP-FAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAI-AIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQ-----SQGCGEGQVACLFEDVVPMNYMV-----YFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGL-FALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTN--SVVNPFIYAYRIREFRQTFRKIIRSHVLR--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VG9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -217487 for 1864 contacts (-116.7/contact) +
2D Compatibility (PS) -25858 + (NN) -4822 + (LL) 4920
1D Compatibility (HY) -25600 + (ID) 3250
Total energy: -272097.0 ( -145.97 by residue)
QMean score : 0.219
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