Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDKSNSSVVSEFVLLGLCSSQKLQLFYFCFFSVLYTVIVLGNLLIILTVTSDTSLHSPMYFLLGNLSFVDICQASFATPKMIADFLSAHETISFSGCIAQIFFIHLFTGGEMVLLVSMAYDRYVAICKPLYYVVIMSRRTCTVLVMISWAVSLVHTLSQLSFTVNLPFCGPNVVDSFFCDLPRVTKLACL--DSYIIEILIVVNSGILSLSTFSLLVSSYIIILVTV--WLKSSAAMAKAFSTL------ASHIAVVILFFGPC--------IFIYVWP-FTISPLD-KFLAIFYTVFTPVLNPIIYTLRNRDMKAAVRKIV-NHYLRPRRISEMSLVVRTSFH |
| 2YDO Chain:A ((21-312)) | --------------------------------------ILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNN---CGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMES------TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAAAENLYF- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -209016 for 1937 contacts (-107.9/contact) +
2D Compatibility (PS) -26313 + (NN) -5515 + (LL) 4476
1D Compatibility (HY) -26000 + (ID) 3550
Total energy: -265918.0 ( -137.28 by residue)
QMean score : 0.220
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