Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEAMKLLNQSQVSEFILLGLTSSQDVEFLLFALFSVIYVVTVLGNLLIIVTVFNTPNLNTPMYFLLGNLSFVDMTLASFATPKVILNLLKKQKVISFAGC-FTQIFLLHLLGGVEMVLLVSMAFDRYVAICKPLHYMTIMNKKVCVLLVVTSW----------LLGLLHSGFQIPFAVNLPFCGPNVVDSIFCDLPLVTKLACIDIYFVQVVIVANSGIISLSCFIILLISYSLILITIKNHSPTGQSKARSTLTAHI------TVVILFFGPC--------IFIYIWPFGNHS--VDKFLAVFYTIITPILNPIIYTLRNKEMKISMKKLWRAFVNSREDT |
| 3VG9 Chain:A ((15-309)) | -----------------------------------AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVL-VLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQ-------SQGCGEGQVACLFEDVVPMNYM----VYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGE-RARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VG9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -220094 for 1811 contacts (-121.5/contact) +
2D Compatibility (PS) -25905 + (NN) -4219 + (LL) 4740
1D Compatibility (HY) -26400 + (ID) 3300
Total energy: -275178.0 ( -151.95 by residue)
QMean score : 0.228
|
|
|