Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---QCESKIPNLQAQCSKFVQKPGPKIHPSEACCKAVKSVDMLCICKHITKEVENI--ISTEKVVYVARTCGLTLKPGTKCGSYTVPPSP
2RKN Chain:A ((1-77))
AIDLCGMSQDEL-NECKPAVSKENPT-SPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPT--C---------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26636 for 486 contacts (-54.8/contact) +
2D Compatibility (PS) -7505 + (NN) -4005 + (LL) 128
1D Compatibility (HY) -2800 + (ID) 1000
Total energy: -41818.0 ( -86.05 by residue)
QMean score : 0.325
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: