Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCFMFLEFLFSTLFIMLIMVLSVFQIILVVILVILVLLQPPGSSSLSGFSNSQQGFNSIIPVKSSANPLNKITAIVAGLFIMNTLLLSGLCSKDVHKKSIAEKIILEKQQENESTSVPFEN
3PNX Chain:A ((45-80))
----------------------------------LLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYACSQLSVEIMGF
General information:
TITO was launched using:
RESULT:
Template:
3PNX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6878 for 156 contacts (44.1/contact) +
2D Compatibility (PS) -3715 + (NN) -1192 + (LL) 5316
1D Compatibility (HY) -1200 + (ID) 600
Total energy: 5487.0 ( 35.17 by residue)
QMean score : 0.219
(partial model without unconserved sides chains):
PDB file :
Tito_3PNX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PNX-query.scw
PDB file :
Tito_Scwrl_3PNX.pdb
: