Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLITLTYNNFKQYAQQGTVPAVEQNNGSK-VLQNSFYKSVYYINSVLWPIKGMLVGVKHDLNTSGITMGRREKVVWGTDAMIAILALQIYYLYSIQELHILCTCQKNYFHISKEQKARNLS
2GSV Chain:A ((11-38))
------IENLKQHIEMNQS-------EDKIHAMNSYYRSVVSTLVQDQLTKNAVVLKRIQHLDEAYNKVKRG-------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2GSV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2069 for 125 contacts (-16.6/contact) +
2D Compatibility (PS) -2829 + (NN) -965 + (LL) 5192
1D Compatibility (HY) -800 + (ID) 450
Total energy: -1921.0 ( -15.37 by residue)
QMean score : 0.272
(partial model without unconserved sides chains):
PDB file :
Tito_2GSV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GSV-query.scw
PDB file :
Tito_Scwrl_2GSV.pdb
: