Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQDEIRLIIDELIRIIPFEGISDKTLLKVCTDLNLANSFCKFQNGIYSALECIVEDLNSSMEAELRNFNLEDMKVQEQIKLAVQICLSNYATLPNYREFLKNILSFSVLPKNIYFSSKLLCRIVDMIWYGIHDQSTDFNYYTKRAILAGVYLSIILFFINDYSEGFADTLSFLDRCINNVMTFQKFKIHLKEIVGSFL
4RHP Chain:A ((113-197))
------------------------------------------------------------------------------------------------YIEHWPRALSILMLPHNIPSSLSLLTSMVDDMWHYAGDQSTDFNWYTRRAMLAAIYNTTELVMMQDSSPDFEDTWRFLENRVNDAMNM---------------
General information:
TITO was launched using:
RESULT:
Template:
4RHP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50403 for 466 contacts (-108.2/contact) +
2D Compatibility (PS) -8843 + (NN) -4040 + (LL) 9696
1D Compatibility (HY) -6000 + (ID) 1850
Total energy: -61440.0 ( -131.85 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_4RHP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RHP-query.scw
PDB file :
Tito_Scwrl_4RHP.pdb
: