Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYNIKLYYSSYLRYNIRSSLYIPFKPNILVKLDILKNEVLSLKTVSPEKVVEVSNLIDKFRLKILTDFQNFEKQWFQEFKNTWKQKLMPNMRSEYLGLHCTKIY
3LDZ Chain:A ((77-131))
------------------------------------GKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQLSLISAMIKNLKEQGVTFP-
General information:
TITO was launched using:
RESULT:
Template:
3LDZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4493 for 306 contacts (-14.7/contact) +
2D Compatibility (PS) -5757 + (NN) -1163 + (LL) 3008
1D Compatibility (HY) -4000 + (ID) 750
Total energy: -13155.0 ( -42.99 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_3LDZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LDZ-query.scw
PDB file :
Tito_Scwrl_3LDZ.pdb
: