Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVQLVLNFIIAVFWLFVTNSYTTNNFVLGFIFGLVLVYLLHRVLPGRFYVITLYRIIKLVIIFLIELIKANFDVLKIIIKPSIKNEPGF--FVYHTDLKKDWQIVLLSNLITLTPGTVVLGVSDDRTKIYIHAIDFSTKEQEVESIKTSLEKIVREVGEI
1GYW Chain:A ((3-78))
----------------------------------------FNDIAPG-IPSITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQADVPKTFQLQLLSPSSSVVPA--------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1GYW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43478 for 354 contacts (-122.8/contact) +
2D Compatibility (PS) -8234 + (NN) 700 + (LL) 8364
1D Compatibility (HY) -1600 + (ID) 1200
Total energy: -45448.0 ( -128.38 by residue)
QMean score : 0.157
(partial model without unconserved sides chains):
PDB file :
Tito_1GYW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GYW-query.scw
PDB file :
Tito_Scwrl_1GYW.pdb
: