Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDLPIIALDFESKEKVNQFLDLFDES-LFVKVGMELFYQEGPQLINEIKERGHDVFLDLKLHDIPNTVGKAMEGLAKLNVDLVNVHAAGGVKMMSEAIKGLR----KHNQHTKIIAVTQLTSTTEDMLRHEQNIQTSIEEAVLNYAKLANAAGLDGVVCSPLESRMLTEKLGTSFLKVTPGIRPKGASQDDQHRITTPEEARQLGSTHIVVGRPITQSDNPVESYHKIKESWLV
2YYT Chain:A ((8-235))
-----IVALDFPSKQEVERFLRPFAGTPLFVKVGMELYYQEGPAIVAFLKEQGHAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVTQLTSTDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCSANEAAFIKERCGASFLAVT----------------VTPRKARALGSDYIVIGRSLTRAADPLRTYARLQHEW--
General information:
TITO was launched using:
RESULT:
Template:
2YYT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128816 for 1665 contacts (-77.4/contact) +
2D Compatibility (PS) -22575 + (NN) -8857 + (LL) 896
1D Compatibility (HY) -24400 + (ID) 5750
Total energy: -189502.0 ( -113.82 by residue)
QMean score : 0.687
(partial model without unconserved sides chains):
PDB file :
Tito_2YYT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YYT-query.scw
PDB file :
Tito_Scwrl_2YYT.pdb
: