Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEKSFLKSKQLVLCGLGVLMLQACTCPNTSQRNSFLQDVPYWMLQNRSQYLTQGVDSSHIVDGKATEEIEKIATKRATIRVAQNIVHKLKEAYLSKSNRIKQKITNEMFIQMTKPIFDSLMNVDRLGIYINPNNEEVFALVRARSFDKDALSEGLHKMSLDDQAVSILVSKVEEIFKDSINYGDVKVPIAM
3VNC Chain:A ((34-181))
---------------------------------NSFLQDVPYWMLQNRSEYITQGVDSSHIVDGKKTEEIEKIATKRATIRVAQNIVHKLKEAYLSKTNRIKQKITNEMFIQMTQPIYDSLMNVDRLGIYINPNNEEVFALVRARGFDKDALSEGLHKMSLDNQAVSILVAKVEEIFKDSV-----------
General information:
TITO was launched using:
RESULT:
Template:
3VNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71670 for 1091 contacts (-65.7/contact) +
2D Compatibility (PS) -15582 + (NN) -7219 + (LL) 3316
1D Compatibility (HY) -21200 + (ID) 6900
Total energy: -119255.0 ( -109.31 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_3VNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VNC-query.scw
PDB file :
Tito_Scwrl_3VNC.pdb
: