Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKILVIGDLIADYYLWGKSERLSPEAPVPVLEVKKESKNLGGAANVANNLTSLKAKVFLCGVVGDDLEGKHFISTLKTRGIDTSGVLIDKTRCTTLKTRIIAQNQQIVRVDKEIKDPLNADLRKNLLDFIAEKIQEIDGVILSDYNKGVLDFELTQTIITLANKHHKLILCDPKGKDYSKYSHASLITPNRAELEQALHLKLDSHANLSKALQILQETYHIAMPLVTLSEQGIAFLEKGELVNCPTIAKEVYDVTGAGDTVIASLTLSLLESKSLKEACEFANAAAAVVVGKMGSALASLEEIALILNQTHPKILPLEKLLETLERNQQKIVFTNGCFDILHKGHASYLQKAKALGDILVVGLNSDNSIKRLKGDKRPIVSEKDRAFLLASLSCVDYVVVFGEDTPIKLIQALKPDILVKGADYLNKEVIGSELAKETRLIEFEEGYSTSAIIEKIKRTHND |
| 4E8W Chain:A ((55-350)) | --RVLVVGDVMLDRYWFGNVDRISPEAPVPVVHVQRQEERLGGAANVARNAVTLGGQAGLLCVVGCDEPGERIVELLGSSGV-TPHLERDPALPTTIKLRVLARQQQLLRVDFEAM-PTHEVLLAGLARFDVLLPQH-DVVLMSDYAKGGLTH--VTTMIEKARAAGKAVLVDPKGDDWARYRGASLITPNRAELREVVG-QWKSEDDLRARVANLRAELDIDALLLTRSEEGMTLFSAGGELHAPALA-----VSGAGDTVIATVATMLGAGVPLVDAVVLANRAAGIVVGK--TATVDYDELF-------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4E8W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -162528 for 2442 contacts (-66.6/contact) +
2D Compatibility (PS) -31122 + (NN) -8578 + (LL) 12956
1D Compatibility (HY) -20800 + (ID) 5850
Total energy: -215922.0 ( -88.42 by residue)
QMean score : 0.476
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