Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISDKA-----------KNNMDSEIEVPQGCF-----YEDILAL-----------------------EGDKEIGDKLNKIIAKIAERNDL-KGVIDSVDFNDNTKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSEVSLLLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKKGLTIY-GQEKDISTTALCKMNMILHNSATADIAKGGSSTLSNPLFTTENGMLKTFDYVVANPPFSLKNWT--DGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSL-NPTGKGAVILPHGVLFRGNAEAQIRKNLLMKGYIKGVIGLAPNLFYGTSIPACVIVLDKENAHARKGVFVIDASKDFKKDGNKNRLREQDVQKMIDTFNALKEIPYYSKMVSLEEISLNDYNLNIPRYIAAKQELEKDLFALINSPSYLPKNEIKAYDPYFQVFKELKNTLFKKSDKEGYYALKTECENIKDLITQSLEYQTFHASVLSAFESLDLFTTFNDLEPGFNPKTLIESVCSKVLKEFEKVGILDKYGVYQLFKDYYNEVLQDDWFLISFNGFRSAKELRKLTPLKDKNKKANYLEEPDFIVQKTYYKSDLIPKHLIKQRFFEKETKELEELENALNEKEALLDEFIEEHSNEEGLFDGLKINESVLKKELKNATDLEDKQILKTALEWLEAKNKALKMKNKAYEELELKAFHQYKNLEINEIKDLIIKDKWLNSLKNALENKIQKRTNAFASALNEIISSYSNSLLELDKEVKESESKVLEHLKDLGLMG |
| 3LKD Chain:A ((11-475)) | -------LYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEETESLDEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLED-LAQGFRDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVMKELAVLDVAGHAG---DMLGDAYEYLIGQFATD---KAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEP---TNFDGVLMNPPYSAK-WSASSGFMDDPR--------FSPFGKLAPKSK-ADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEGAIDTVIGLPANIFFNTSIPTTVIILKKNRTN--RDVYFIDASKEFDKGKNQNIMTDAHIEKILNAYKSREDIDKFAHLASFEEIVENDYNLNIPRYVD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LKD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 98132 for 3148 contacts (31.2/contact) +
2D Compatibility (PS) -40330 + (NN) 6106 + (LL) 29212
1D Compatibility (HY) 14400 + (ID) 1800
Total energy: 105720.0 ( 33.58 by residue)
QMean score : 0.036
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