Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIDTHCHLDHKDYENDLDEVLKESLEKGVTQCVIPGADMKDLNRAVGISEKFEGVFFAIGAHPYDVESFDEG---LFEKFVSHQKCVAIGECGLDYYRLPELSERENYKSKQKEIFTKQIEFSIQHNKPLIIHIREASFDSLNLL--KSYPKAFGVLHCFNADSMLLELSDR---FYYGIGGVSTFKNAKRLVEILPKIPKNRLLLETDSPYLTPHPFRGTRNSPTYIPLIAQKIAEIIHIETEELASLSTHNAQTLFNFP
2GZX Chain:A ((2-254))
-LIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGIIGWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHW------DKSPADVQKEVFRKQIALAKRLKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVTFKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEEVCEQTTKNAEKLFN--
General information:
TITO was launched using:
RESULT:
Template:
2GZX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161839 for 2155 contacts (-75.1/contact) +
2D Compatibility (PS) -26408 + (NN) -16679 + (LL) 592
1D Compatibility (HY) -18000 + (ID) 4700
Total energy: -227034.0 ( -105.35 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_2GZX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GZX-query.scw
PDB file :
Tito_Scwrl_2GZX.pdb
: