Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VNNPKPCEWKSNELSRGYIADYKAFNFVDGEGVRCSLYVSGCPFHCEGCYNKAAQSFKYGKPYTKELEDDILKDI------GHESVQGLTLLGGEPFLNTATCLSIVKRIRATYGETKDIWSWTGYTWDEMMQETADKLELLSLIDVLVDGRFEQKLFDPNLAFRGSSNQRIIDVQKSLAAGEVVLYEL
3C8F Chain:A ((4-84))
----------------GRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVE---DLMKEVVTYRHFMNASGGGVTASGGEAILQA-----------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3C8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13589 for 487 contacts (-27.9/contact) +
2D Compatibility (PS) -7902 + (NN) -2368 + (LL) 7912
1D Compatibility (HY) -4000 + (ID) 1250
Total energy: -21197.0 ( -43.53 by residue)
QMean score : 0.193
(partial model without unconserved sides chains):
PDB file :
Tito_3C8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C8F-query.scw
PDB file :
Tito_Scwrl_3C8F.pdb
: