Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYQSLSNIIINLQANKDLLLQQDNEVDRIKSILPLVVARNSIIETLGR------NPVWGISLTDDVNNLKIDNQLVTEVIPFDWNNETLYLCYFSDLESSNSPSEMGISFQLVNIFSLS
3VMF Chain:A ((376-433))
-----------VEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDVKPA--------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VMF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -599 for 208 contacts (-2.9/contact) +
2D Compatibility (PS) -5264 + (NN) 738 + (LL) 4092
1D Compatibility (HY) -4000 + (ID) 950
Total energy: -5983.0 ( -28.76 by residue)
QMean score : 0.109
(partial model without unconserved sides chains):
PDB file :
Tito_3VMF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VMF-query.scw
PDB file :
Tito_Scwrl_3VMF.pdb
: