Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKVLLAILSMVLLLSLAACGGSSDSSKDKNGKEEIVM--WGSWSG---DQIKQLEKQIDSYNKSQDKYKVKYVM--------QENVEEKLLTGIAGGELPDIIM-WDRYQTALYAPKGVLEPLDKLVKEDNLKMDDFYEESVKEMTYSDKLYGLPLLNDNRILFYNKKLLQEAGV---KPPTTWDELATAAQKTTKWDGNKMTQAGM------SLQDV--GLFNLYLMQAGGELVTSDNKETAFNSEQGLEVLNYWDKM-QNDLKVYQRGFDDGS----DAFAAGKEAMTYNGPWAL-ADYNKVEDLDYGVVEPPKGPNGDK-GAIMGGFGLVMPKQAEHKDGAWDFMKWWTTKPENGVEFA-KISGWLPANKIAAEDEYFTKDPNYSVFVNTMKYAKIRPTVAGYADVEGLAMKPQFEKFMNGNISAEKALSQAEKEGNQILKEERDK |
4R9G Chain:A ((42-405)) | ----------------------------------QVVLTLWYPWAGPDGDAVVSLAKE---YSKTHPNVQIKAQMVSGAGIAA------KFLSAVAAGNPPDLVLYWGQDALPGLADQGAIIPLDDYLKD--VDTSKFFEAAYNAMKYKGKIYGLPEMVNVRVLFWNKDLFKQAGLDPNTPPKTIAELDQMAAKLTKTKNGTIEQMGFIPWIGQGVPHVMAGVFGTSLVDSNGNPILSPDKNPQLLNLLKWEV-SYSDKYGAMNINKFIAGMSQNSSQANDPFVLGKVAMMISGEWQINANKQYNPKLNFGVGPIPQAPGGKPMPSLMDGNTWMIPKGSKHPQEAMDFIK-WTMDPQRIADTADKVYNIAPIVE-AAKIQKLNNDPYFKEVLNVAQKGSIYYTPA--------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R9G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -51668 for 2531 contacts (-20.4/contact) +
2D Compatibility (PS) -34479 + (NN) -14573 + (LL) 6172
1D Compatibility (HY) -22800 + (ID) 5200
Total energy: -122548.0 ( -48.42 by residue)
QMean score : 0.467
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