Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAAILQIIGFKNSGKTTLLNALIRASRKENYTVSAIKHDAHDFSVDHAGTDSYSFQESGAEAVVIANSRQYAVMEQTG----IDLKTAIQKLPES--DIVLIEGYKEGPFPKIILVREQAEIELLKNSKAVHKIATHNPALKKEAIFIGEENALNLFAETLIKEFLK
1NP6 Chain:A ((5-124))
MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH------------ELRKAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGA-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1NP6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54630 for 543 contacts (-100.6/contact) +
2D Compatibility (PS) -11536 + (NN) -7714 + (LL) 4612
1D Compatibility (HY) -10400 + (ID) 1700
Total energy: -81368.0 ( -149.85 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_1NP6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NP6-query.scw
PDB file :
Tito_Scwrl_1NP6.pdb
: