Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKIAPSILSADFATLARDIKEVENCGADYIHIDVMDGHFVPNITFGPAVVQAIRPETKLPLDVHLMIENPDTYIPEFAKAGADYITVHVE--ACTHLHRTLQLIRSYGVKAGAVLNPATPIDVLQHVLNELDMVLFMTVNPGFGGQKFIPEVLEKISAFKEIVDKKGLDIEIEVDGGVDHETAKLCRDAGANVFVAGSYIYGNKNRQTPIDKLRAIVGE
1TQJ Chain:A ((7-218))
---VAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNP----QSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVR-----
General information:
TITO was launched using:
RESULT:
Template:
1TQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -204567 for 1761 contacts (-116.2/contact) +
2D Compatibility (PS) -22214 + (NN) -8231 + (LL) 188
1D Compatibility (HY) -23600 + (ID) 6000
Total energy: -264424.0 ( -150.16 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_1TQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TQJ-query.scw
PDB file :
Tito_Scwrl_1TQJ.pdb
: