Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFYKTKQSLDQLV----QNGSTPGISYQI-KTNHLEENNIMGLKSVFPEAEILPRTTENIYDIASLTKVIATTTRILQLIEQQRFQLNDPIQVYLPDFQYN------NVTILHLLTHSSGLAQNIPN----FSMNNR-EDVMRYVYATPQINTPGTVVTYADANFLLLGYLISKL-DGNYEKAIQNNILEPLIMTNTSFHPVNKK---QVIPTELDQTRGLIQGEVHDFKAWTAKSGTGHAGLFSTLSDLSKFRDALMLQLGAPILSEKTWQLMQINHT--------PGLNRSRGLGWDLRG-ESVLYHTGFT---GTFMVLDLKRQASLIVLSNRVHPSRANPNFVDKRDSIVDTFIEEVSNTKEV |
| 4GDN Chain:A ((11-324)) | ----SQQQIDKIIEHDLQKGHIPGASILIVKNGKVFLNKGYGYQDVDKKVKASPTTK---YEIASNTKAF-TGLAILKLAQEGRLNLNDDVSKHVPHFKMNYNGQNETITIKQLLAQTSGIPSDITSEDAVTNKNNRLNDVTRAIMGDELHHKPGEEFEYSNMNYDLLGLIIQNVTKQSYTKYITNSWLKPLHMTHTSFKQTNNKSKHDAIGYELQGSTPVVSKP--EFNLWDTPS----AYMMTSTEDLEHW---IKFQLNPP---DKYKSLVQQSHKNLSSTIGEPNAN-AYASGWFTNNDEHLVFHSGTLDNFSSFILLNPKQNYGIVVLAN-------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GDN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -139747 for 2283 contacts (-61.2/contact) +
2D Compatibility (PS) -30404 + (NN) -14037 + (LL) 3308
1D Compatibility (HY) -17200 + (ID) 4750
Total energy: -202830.0 ( -88.84 by residue)
QMean score : 0.375
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