Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTETKEEKVHKVFEKISPSYDRMNSVISFKLHVKWRKETMKLMRVQK------GTNVLDVCCGTADWSIMMAEEI-----GPEGHVTGLDFSENMLKVGREKVKEADLH----NVELIHGNAMELPFPD-NSFDYVTIGFGLRNVPDYMQVLREMYRVLKPGGQLACIDTSQPNIPGWKQVFNAYFRYVMPVFGKFFAKSYKEYSWLQESTREFPGMARLAEMFQEAGFSYVRYISHSGGASATHFGFKKKEQ
4OBW Chain:A ((24-256))
---------------VANRYDLMNDVMSLGIHRLWKDHFINKLDAGKRPNSTTPLNFIDVAGGSGDIAFGLLDHAESKFGDTESTMDIVDINPDMLKEGEKRAMEQGKYFKDPRVRFLVSNGEKLEEIDSDSKDIYTVSFGIRNFTDIQKGLNTAYRVLKPGGIFYCLEFSKIENPLMDFAYQQWAK-VLPVMGSMIANDYDSYQYLVESIERFPDQETFKSMIEKAGFKSAGYESLTFGICAIHWGIK----
General information:
TITO was launched using:
RESULT:
Template:
4OBW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119487 for 1772 contacts (-67.4/contact) +
2D Compatibility (PS) -23457 + (NN) -9890 + (LL) 1988
1D Compatibility (HY) -14800 + (ID) 3400
Total energy: -169046.0 ( -95.40 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_4OBW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OBW-query.scw
PDB file :
Tito_Scwrl_4OBW.pdb
: