Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKQRQLLLKIENLEDDFNRKRRQLDEAMDEASQEKWRFHQELENLSEQIRYIYQKRDYDASEDLPKAYHLISSIQEEGEWMVKNAVTHLENESEEHQTLYKKQVTAYEEELHQLKKERD
1U6G Chain:A ((303-353))
--------------------------------------FHTEFQNL----------LDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQG--------------------------
General information:
TITO was launched using:
RESULT:
Template:
1U6G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6692 for 248 contacts (-27.0/contact) +
2D Compatibility (PS) -4935 + (NN) -2880 + (LL) 6840
1D Compatibility (HY) -2400 + (ID) 950
Total energy: -11017.0 ( -44.42 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_1U6G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U6G-query.scw
PDB file :
Tito_Scwrl_1U6G.pdb
: