Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENTYERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQ-FECYRKTVTYQLYIGSGNYRKKEN
2YVL Chain:A ((16-67))
-----------------------------------------------------------------------------EKKFLRKLLPKQSLSVKKSVLKFDEVIGKPEGVKINGFEVYRPTLEEIILLGFERKTQIIY
General information:
TITO was launched using:
RESULT:
Template:
2YVL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8408 for 258 contacts (-32.6/contact) +
2D Compatibility (PS) -5508 + (NN) 401 + (LL) 7896
1D Compatibility (HY) -3600 + (ID) 950
Total energy: -10169.0 ( -39.41 by residue)
QMean score : 0.190
(partial model without unconserved sides chains):
PDB file :
Tito_2YVL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YVL-query.scw
PDB file :
Tito_Scwrl_2YVL.pdb
: