Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIKGLLSPNSKVSPKDYKVYMRVLSFVFSVCSLIMIVSSFLHTFESNFTKGFSFGSGIALFAGSFYFLVITFSEKRFQHYYTKVFDERNQFIANMSCRLLFLLSVLVLVVLCLINVWFGITFSYAKFLLLILSFVLYGYLLIYFILQKLL
2JWP Chain:A ((70-105))
-----------------------------------------------------SFGYDIPIKEEGEYVLVLKFAEVYFAQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYDNPKV
General information:
TITO was launched using:
RESULT:
Template:
2JWP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1080 for 98 contacts (-11.0/contact) +
2D Compatibility (PS) -3799 + (NN) -413 + (LL) 4036
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -5206.0 ( -53.12 by residue)
QMean score : -0.314
(partial model without unconserved sides chains):
PDB file :
Tito_2JWP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JWP-query.scw
PDB file :
Tito_Scwrl_2JWP.pdb
: