Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MANDWKKSARGLALMTLEEVFDKG-AYSNIALNKSLKKSRLSDKDRALVTEIVYGTVARKITLEWYLSHFIV-DRDKLELWVYHLLLLSLYQLLYLDNIPDHAIVNDAV--TIAKNRGNKKGAEKLINAVLRRVSSETLPEIASIKRQNKRYSVAYSMPVWLVKKLIDQYGETRALAIMESLFERNKASLRVTDLSQKQTIKETLNVRDSHIAETALVADSG--NFASTSF-----------------FQDGLITIQDESSQLVAPTLKVSGNDQVLDACSAPGGKTSHIASYLTTGAVTALDLYDHKLELVMENAKRLGLSDKIKTKKLDASKAHEYFLEDTFDKILVDAPCSGIGLIRRKPDIKYNKANQDFEALQEIQLSILSSVCQTLRKGGIITYSTCTIFEEENFQVIEKFLENHPNFEQVELSHTQEDIVKRGCISISPEQYHTDGFFIGQVKRIL |
| 1SQF Chain:A ((5-426)) | ------RNLRSMAAQAVEQVVEQGQSLSNIL---PPLQQKVSDKDKALLQELCFGVLRTLSQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLY-TRIPPHAALAETVEGAIAIKRPQLKG---LINGVLRQFQRQQEELLAEFNASDARYL----HPSWLLKRLQKAYPE-QWQSIVEANNQRPPMWLR---------INRTHHSRDSWLA---LLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCE-TGTPEQPGKQNL----PGAEEGDGFFYAKLIKK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SQF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -136713 for 3358 contacts (-40.7/contact) +
2D Compatibility (PS) -42663 + (NN) -19091 + (LL) 2976
1D Compatibility (HY) -28400 + (ID) 7050
Total energy: -230941.0 ( -68.77 by residue)
QMean score : 0.414
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