Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYKTIKSDGIVEEEIKKSRFICHLKRVESEEEGRNYITQIKKAHYKANHSCSAMVIGEKGDIKRSSDDGEPSGTAGIPMLTVLEKQGLTNVVAVVTRYFGGIKLGAGGLIRAYSGSVANTIKEIGVVEVKEQIGIRIQLTYPQYQTFDNFLKEHHLQEFETEFLEAVTCKIYVDPKEFEHTITNLTEFYQGKALLTEEGSQIVEIPFKAETDK
2CVE Chain:A ((4-190))
----TLADKVVYEEEIQKSRFIAKAAPVASEEEALAFLAENREP--EATHNGHAYKIG---LLYRFSDDGEPSGTAGRPILHAIEAQGLDRVAVLVVRYFGGVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARALKAEETYTPEGVRFALLLPKPEREGFLRALLDATRGQVALE-----------------
General information:
TITO was launched using:
RESULT:
Template:
2CVE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90484 for 1457 contacts (-62.1/contact) +
2D Compatibility (PS) -19906 + (NN) -918 + (LL) 1580
1D Compatibility (HY) -11600 + (ID) 3550
Total energy: -124878.0 ( -85.71 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_2CVE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CVE-query.scw
PDB file :
Tito_Scwrl_2CVE.pdb
: