Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKVVKFGGSSLASSQQLYKVLNIIKS-DYTRRFVVVSAPGKRYEEDLKMTDALIQY---YQNYINGKDIVKDQTWIINRYQEIISDLSLGSTIAEEITRSIEQLASLPIENNQFLYDCFLAAGEDNNAKLVATFFNQNDIPARYVHPNEAGIIVTKEPCNARIIPGSYDKIENLCLYNE------VLVIPGFFGV-TEDNQICTFSRGGSDITGSLIAAGIKADLYENFTDVDGIFAAHPGVVKNPHAIPELTYKEMRELAYAGFSVLHDEALLPAYRDRIPLVIKNTNNPQQPGTKIVLKHTRSNIAVTGIASDSRFASINVSKYLMNREVGFGRKVLQILEDLNISFEHMPTGIDDLSIVLREKELTP--IKEQEILNYLTRKLE-VDYVDIQHNLSTIVIVGENMKSQIGVTATATQALSREKINITMISQGSSEVSIMFVINSKDEKRAIKALYETFFQK |
| 2CDQ Chain:A ((30-484)) | --VMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSIIKELH--IRTVKELNIDPSVILTYLEELEQLLKGIAMMK-ELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKR-LYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQE-LDHVVEELEKIAVVNLLKGRAIISLIGNVQHSSL-ILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALHKSFFES |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CDQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -252058 for 3765 contacts (-66.9/contact) +
2D Compatibility (PS) -47708 + (NN) -14693 + (LL) 924
1D Compatibility (HY) -32000 + (ID) 6500
Total energy: -352035.0 ( -93.50 by residue)
QMean score : 0.484
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