Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKKIIAVDLDGTLLHNNNTISDYTADTLRKVQAQGHKVIITTGRPYRMALAHYLR-LDLKTP---MINFNGALTHIPEKKWAFERSA-TIDKKLLLETLNLSDAIQADFIASEYRKNFYITMDNRD----------------------KINP--QLFGVNEITDKMALDVTKITRNPNALLMQTRHKDKYELAKELRQHFNHELEVDSWGGPLNILEFSPKGVNKAYALKHLLKSLNLSQENLIAFGDEHNDTEMLAFAHTGYAMKNANPTLLPYADQQIQWTNEEDGVAKTLEKLLL |
| 1RKQ Chain:A ((6-271)) | ---KLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPY-AGVHNYLKELHMEQPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLE--KLSREVGSHFHALD-RTTLYTA--NRDISYYTVHESFVATIPLVFCEAEKMDPNTQFLKVMMIDEPAILD-QAIARIPQEV------KEKYTVLKS-APYF---------------LEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAVDNAIPSVKEVAN-FVTKSNLEDGVAFAIEKYVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RKQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -59200 for 2022 contacts (-29.3/contact) +
2D Compatibility (PS) -25194 + (NN) -10519 + (LL) 2472
1D Compatibility (HY) -20400 + (ID) 4500
Total energy: -117341.0 ( -58.03 by residue)
QMean score : 0.398
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