Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEKFFKLKEHGTTIRTEITAGLTTFFAMSYILFVNPAILSQTGMPAQGVFLATIIGAVVATSVMAFYANLPYAQAPGMGLNAFFTYTVVFALGYTWQEALAMVFICGLISLIITLTKVRKMIIESIPTTLKSAITAGIGTFLAYVGIKNAGFLKFSIDPGTYDVVGKGAAKGLATITANSSATPGLVSFDNPAILLSLIGLSITIFFIVKGIRGGIILSILTTTLLGILMGVVKLDAINWEATNLSASFRDLKQVFGVALGEKGLISLFSNPSRLPSVLMAILAFSLTDIFDTIGTLIGTGEKVGILATTGDNHESKSLDKALYSDL-----IGTTFGAICGTSNVTT---YVESAAGIGA----GGRTGLTALVVAGLFAISSFFSPLV--------SIVPSQATAPILVIVGIMMLSNLKDIKWDDMSEAIPAFFTSLFMGFTYSITYGIAAGFLTYTLAKVIKGQAKDIHVVLWILDILFILNFISLAIL |
| 2XDR Chain:A ((239-440)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SASSSSLKEVT-MALGGKSPLIIFPDADLDRAADIAVMAN-----FFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGER-----VTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSI-----------LVYDDEDEAIRR---------ANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGY |
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General information:
TITO was launched using:
| RESULT:
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Template: 2XDR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -81238 for 1343 contacts (-60.5/contact) +
2D Compatibility (PS) -19512 + (NN) -788 + (LL) 21956
1D Compatibility (HY) -7600 + (ID) 2750
Total energy: -89932.0 ( -66.96 by residue)
QMean score : 0.168
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