Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIRNEFYNQLINSEPIGFIDPFTDLGEFDSIQMKFKQPVRNLVNKYSGKPYNLSWQNKIEQMRVLYIKYQKSLKLEDEEQEVHNR-----VKNKKSKKYVHEIVTTYLKLGFRFKEIEARVSLFNTRLRRNWKRSDYVTTDNPEFYLKKDLQNGYCSPNSFLPRSMKIN |
4UXJ Chain:A ((35-97)) | -------------------------------------------------------------------------------REIHARRSCFVIKYS-------------DQLMLR---AQAAVSQL-TEVRDTWKRFDVLAIDEGQFFSDLVDFCNTAADAGKVVMVSALD |
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General information:
TITO was launched using:
| RESULT:
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Template: 4UXJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 1281 for 225 contacts (5.7/contact) +
2D Compatibility (PS) -4616 + (NN) 1313 + (LL) 6776
1D Compatibility (HY) -3600 + (ID) 850
Total energy: 304.0 ( 1.35 by residue)
QMean score : 0.394
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