Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MINDKNRYRGSLLAQSILKEKVTRTVTKDEMLETVNLDYRRLIIIQLVSIAFGGMAIWCLIALVLLTVVGILICSLHNDLPFVTAIPIESPIKMIWLEGWQINVAIGLIGTFGIFLDKWATNKMDALREATDKKQLTKDYLAWKEEHNG
3K7L Chain:A ((27-67))
-------YRHYKRDQPVIKRKVY------EMINTMNMIYRRLNF----HIALIGLEIWSNINEINVQSDVRATLNLFGEWREKKLLPRKRNDNAQLLTGIDFNGTPVGLAYIGSICNPKTSAAVVQDYSSRTRMVAITMAHEMGHNLGM
General information:
TITO was launched using:
RESULT:
Template:
3K7L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9328 for 178 contacts (-52.4/contact) +
2D Compatibility (PS) -4243 + (NN) -1003 + (LL) 1416
1D Compatibility (HY) -5200 + (ID) 950
Total energy: -19308.0 ( -108.47 by residue)
QMean score : 0.366
(partial model without unconserved sides chains):
PDB file :
Tito_3K7L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K7L-query.scw
PDB file :
Tito_Scwrl_3K7L.pdb
: