Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKSQTDYFSDDLMADALQAENYLRQSYTCPLQTIQRGIEQGLQSYLERYRLASPQLKFQIFLFSNFYGEKMKYLLEEGEGEFHV
3GM5 Chain:A ((12-47))
--------------------KNILDMRNTVQIGIVVRDIEESLQNYAEFFGVEKPQWFWTDDYSKAHTKFNGRPTKARAKLAFFE
General information:
TITO was launched using:
RESULT:
Template:
3GM5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 311 for 128 contacts (2.4/contact) +
2D Compatibility (PS) -3878 + (NN) -90 + (LL) 1392
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -6065.0 ( -47.38 by residue)
QMean score : 0.189
(partial model without unconserved sides chains):
PDB file :
Tito_3GM5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GM5-query.scw
PDB file :
Tito_Scwrl_3GM5.pdb
: