Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDEKYGVPRDIYAKVKIIGLVIADIVFVGGSAVAALSIGTRIFPTNQWPQLVAFMILTPLMCLYLVLPTNGGKKNWHSMFLFFRRRRKRYISLNYQRRENR
2RCF Chain:A ((29-70))
--EKPGAPRQV--AVDAIGCIPGDWVLCVGSSAAREAAGSKSYPSDLTIIGIIDQWNG-------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2RCF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2597 for 180 contacts (-14.4/contact) +
2D Compatibility (PS) -4152 + (NN) 2258 + (LL) 4072
1D Compatibility (HY) -800 + (ID) 750
Total energy: -1969.0 ( -10.94 by residue)
QMean score : 0.294
(partial model without unconserved sides chains):
PDB file :
Tito_2RCF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RCF-query.scw
PDB file :
Tito_Scwrl_2RCF.pdb
: