Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKKLLRKEVLITLKSQPQAYKSEVDCKLLEAFIKTKAYQNSCVIATYLSFDYEYNTQLLIKQALCDGKRVLVPKTYPKGKMI-FVDYQKDNLRATPF-GLLEPVNDRA--VEKASIDLIHVPGLIFNNKGFRIGYGAGYFDRYLSDFEGDTISTIYRCQRQDFVEE-KHDVAVKEVLCL
1YDM Chain:A ((38-177))
--------------------------------------WQNAGTIAVTISRGLEIPTRPVIEQAWEEGKQVCIPKC---TKKMQFRTYQTDDQLETVYAGLLEPV--KTKEVNPSQIDLMIVPGVCFDVNGFRVGFGGGYYDRYLSEYEGKTVSLLLECQLFAHVPRLPHDIPVHKLITE
General information:
TITO was launched using:
RESULT:
Template:
1YDM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53494 for 907 contacts (-59.0/contact) +
2D Compatibility (PS) -14029 + (NN) -4397 + (LL) 3728
1D Compatibility (HY) -13200 + (ID) 2850
Total energy: -84242.0 ( -92.88 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_1YDM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YDM-query.scw
PDB file :
Tito_Scwrl_1YDM.pdb
: