Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKF-AKEYPTTVLLVSLTTLVFLLMQLTYGSQAESSQVIFQFGGIQGD--YLKAYP------TNLWRLISPIFVHIGWEHFLLNGLALYFVGQMGESIWGSLRFLILYILSGLMGNIFTLFFTPHVVAAGASTSLFGVFSAI-AIAGYF----GKNPYLKQVGKSYQVMILLNLFFNIFTP--GVSL--AGHVGGLVGGVLVAIFLTKQNGSLLFKTWQSILALMIFIIVSISLIGLSLV
2NR9 Chain:A ((4-178))
---FLAQQGKITLILTALCVLIYIAQQL----------------GFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAI--------TGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRKNSLELVP----------------------
General information:
TITO was launched using:
RESULT:
Template:
2NR9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126154 for 1169 contacts (-107.9/contact) +
2D Compatibility (PS) -15832 + (NN) -3946 + (LL) 4072
1D Compatibility (HY) -20400 + (ID) 2500
Total energy: -164760.0 ( -140.94 by residue)
QMean score : 0.192
(partial model without unconserved sides chains):
PDB file :
Tito_2NR9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NR9-query.scw
PDB file :
Tito_Scwrl_2NR9.pdb
: