Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEKQTAGRRQLEEFAPEFARYNDDILFGEVWAKEDHLTDKTRSIITISALISGGNLEQLEHHLQFAKQNGVTKEEIADIITHLAFYVGWPKAWSAFNKAKEIWI
4G9Q Chain:A ((142-242))
--QRATTVGNQFGSVAPGLVQYTTDYLFRDLWLRPD-LAPRDRSLVTIAALISVGQVEQITFHLNKALDNGLSEEQAAEVITHLAFYAGWPNAMSALPVAKAVFE
General information:
TITO was launched using:
RESULT:
Template:
4G9Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13161 for 639 contacts (-20.6/contact) +
2D Compatibility (PS) -10455 + (NN) -3079 + (LL) 316
1D Compatibility (HY) -8400 + (ID) 2000
Total energy: -36779.0 ( -57.56 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_4G9Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G9Q-query.scw
PDB file :
Tito_Scwrl_4G9Q.pdb
: