Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKNKIKKTLVDQILDKAKIEHDSLQLDALQGDLPNGIQKQDIFKTL--ALIGDKTGPIIGILPLTEHLSEKKLAKISGNKKVQMIPQKDLQKITGYIHGANNPIGIRQKHNYPIFIDTIALEKQELIVSAGEIGRSIRINSEVLADFVNAKFADIKE
2DXA Chain:A ((45-162))
-------------------------------------GLNPDQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAKKVEMADPMVAQRSTGYLVGGISPLG--QKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIAR
General information:
TITO was launched using:
RESULT:
Template:
2DXA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53209 for 874 contacts (-60.9/contact) +
2D Compatibility (PS) -12782 + (NN) -3948 + (LL) 2760
1D Compatibility (HY) -6400 + (ID) 2250
Total energy: -75829.0 ( -86.76 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_2DXA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DXA-query.scw
PDB file :
Tito_Scwrl_2DXA.pdb
: