Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLFQEKIAYNCAKKEALYKESLGRYALRSMLAGAYLTMSTAAGIVAADTIGKI-----SPALSGFVFAFIFSFGLIYVLIFNGELATSNMLYLTAGAYNKNISWKKAITILIYCTFFNLVGACILAWLFNQSYSFQHLTNDSFLGHVVAKKLGKPSSGAFLEGIIANMFVNLAILAYMLLKEESAKMTVILSAIFMFVFLSNEHLIANFASFMLAAFSHIEHIKGFTLLNVIRQWTLVFFGNWIGGGVFIGLAYAWLNKTKTSHHE
3TDO Chain:A ((10-259))
-----DKLTNAAINKINLLNTSKVKYLVSSAFAGLYVGI----GILLIFTIGGLLTDAGSP-MTKIVMGLSFAIALSLVIMTGTELFTGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLVDKGPVAEFFANTAASKASMPFTALFFRGILCNILVCVSVLCSFRTNSDTAKIIMIFLCLFAFITSGFEHSVANMTIYSVSLFS--PTISTVTIGGAIYNLVAVTLGNIVGGALFMGLGTYILGKEK-----
General information:
TITO was launched using:
RESULT:
Template:
3TDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -239045 for 2205 contacts (-108.4/contact) +
2D Compatibility (PS) -25980 + (NN) -12564 + (LL) 1528
1D Compatibility (HY) -22400 + (ID) 3650
Total energy: -302111.0 ( -137.01 by residue)
QMean score : 0.349
(partial model without unconserved sides chains):
PDB file :
Tito_3TDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TDO-query.scw
PDB file :
Tito_Scwrl_3TDO.pdb
: