Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLNNYIASIENYPQEGITFRDISPLMADGKAYSYAVREIVQYAADKDIDMIVGPEARGFIVGCPVAYALGIGFAPVRKPGKLPREVISADYEKEYGLDTLTMHADAIKPGQRVLIVDDLLATGGTVKATIEMIEKLGGVVAGCAFLVELDGLNGRKAIEGYDTKVLMNFPG
4LZA Chain:A ((27-195))
-EIKMMIREIPDFPKKGIKFKDITPVLKDAKAFNYSIEMLAKALEGRKFDLIAAPEARGFLFGAPLAYRLGVGFVPVRKPGKLPAETLSYEYE----TDSLEIHKDAVLEGQRVVIVDDLLATGGTIYASAKLVESLGGIVDSIIFLTELTFLDGRKKLDGYDIISLIKF--
General information:
TITO was launched using:
RESULT:
Template:
4LZA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153765 for 1291 contacts (-119.1/contact) +
2D Compatibility (PS) -17440 + (NN) -3958 + (LL) -16
1D Compatibility (HY) -18000 + (ID) 4050
Total energy: -197229.0 ( -152.77 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_4LZA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LZA-query.scw
PDB file :
Tito_Scwrl_4LZA.pdb
: