Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKKFAFAKGIATGVVATAATLAGAAFAI--KKTIIEPEEEKIAFIEENRKKAARKRVSH
4NQY Chain:A ((226-267))
---------------IASRMTMTNMAIEMGGKTGIIEPDEKTIQYVKEAMKKHGTERPFE
General information:
TITO was launched using:
RESULT:
Template:
4NQY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6005 for 179 contacts (33.5/contact) +
2D Compatibility (PS) -4207 + (NN) 397 + (LL) 1392
1D Compatibility (HY) -3600 + (ID) 700
Total energy: -713.0 ( -3.98 by residue)
QMean score : 0.272
(partial model without unconserved sides chains):
PDB file :
Tito_4NQY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NQY-query.scw
PDB file :
Tito_Scwrl_4NQY.pdb
: