Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYSGKKAIVFSLFGIAFGYFCHRMILLYDSLPNQPPIEKIAYLFSDGQKVLMQQPWEFGFTKRSLLAFVSGFLSMCLVYLYVSTGQKIYREGAEYGSARFGTRKEKRFFYSKNPFNDTILAQDVRLTLLEKKSPKFDRNKNLIVIGGSGAGKTFRFVKANLIQLNCSN-----IVVDPKDHLAEKTGKLFLENGYQVKVLDLVNMTNSDGFNPFRYVETENDLNRTLTVYFNNTKGTGSRSDPFWDEASMTLVRAIASYLVDFYNPPGSAKEEAEQRRKRGCYPAFSEIGKLIKLLSKGDNQDKSVLEVMFEEYAKKYGTENFTMRNWADFQNYKDKTLDSVIAVTTAKFALFNIQSVIDVTKRDTLDLKTWGTQKTMVYLVIPDNDTTFRFLSALFFSTVFSTLTRQADVDFKGKLPIHVRSYLDEFPNIGEIPDFAEQTSTVRSRNMSLVPILQNIAQLQGLYKEKEAWKTILGNCDSLLYLGGNDEETFKFMSALLGKQTIDVRNTSRSFGQTGSGSLSHQKIARDLMTPDEVGRMRRDECLVRIAGVPVFRSKKYLPTRHKNWKLLAEKETDDRWCHYHINPLSHDEPLDLFDHKMRDLTAETTLH |
| 3FHC Chain:B ((112-186)) | ------------------------------------------------------------------------------------------------------------------FNRPSKIQENALPLMLAEPPQ-----NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3FHC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 583 for 391 contacts (1.5/contact) +
2D Compatibility (PS) -7996 + (NN) -6228 + (LL) 34524
1D Compatibility (HY) -2800 + (ID) 1350
Total energy: 16733.0 ( 42.80 by residue)
QMean score : 0.250
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