Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVLIAEDEEQMSRVLSTAISHQGYVVDVAYDGQTAIDLANQNAYDVMVMDVMMPVKTGVEAVKEIRQSGNKSHIIMLTAMAEIDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRRLED----FTPNVLSLGRVTLSVGEQELQCE-NTIRLAGKEAKMLAFFMLNHDKELSTQQLFEHVWGAD--KDQEDVDEGYVFIYVSYLRQKLQAISAN-LEIIGQEGSSYKLSEINGG
2OQR Chain:A ((7-228))
--VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLD-----VHVKRLRSKIEADPANPVHLVTVRGLGYKLE-----
General information:
TITO was launched using:
RESULT:
Template:
2OQR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87171 for 1476 contacts (-59.1/contact) +
2D Compatibility (PS) -22928 + (NN) -9598 + (LL) 512
1D Compatibility (HY) -17600 + (ID) 3950
Total energy: -140735.0 ( -95.35 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_2OQR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OQR-query.scw
PDB file :
Tito_Scwrl_2OQR.pdb
: