Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METNIYGDYGRYLPLILEDFSQRIQLENDKAKVETGYKLYEHIIGRIKTSDSMIEKCRRKQLPVTVDSALKAIRDSIGVRIICGFVNDIYQIVERIKSFDDCRIVVEKDYIQHVKPNGYRSYHVILEIDTPYPDCLGNSEGKYYIEIQLRTIAQDSWASLEHQMKYKHDIENPERIVRELKRCADEMASVDLTMQTIRQLIESGTKKE
3L9D Chain:A ((38-189))
----------------------------------------EFVTGRVKPIESIKEKMVLR--GIKKENLTQDMQDIAGLRIMVQFVDDVNDVLELLRQRKDMKVIQERDYINN-KPSGYRSYHVIVE----YPVDTISGQRIIMAEIQIRTLAMNFWATIEHSLNYKYHGEFPEDIKRRLELTSKIAFQLDEEMRQIRDDIKEAQLLF
General information:
TITO was launched using:
RESULT:
Template:
3L9D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58576 for 978 contacts (-59.9/contact) +
2D Compatibility (PS) -16452 + (NN) -6670 + (LL) 3236
1D Compatibility (HY) -10000 + (ID) 2750
Total energy: -91212.0 ( -93.26 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_3L9D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L9D-query.scw
PDB file :
Tito_Scwrl_3L9D.pdb
: