Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEIDYKKVTGMIHSTESFGSVDGPGIRFIIFMQGCKMRCQYCHNPDTWEMETNNSKERTVEDVLKEALRYKHFW-GKDGGITVSGGEAMLQIDFITALFIEAKKLGIHTTLDTCGFAYRATPEYHAILEKLLDVTDLVLLDLKEIDPEQHKIVTRQSNKNILQFARYLSDRGTPVWIRHVLVPGLTDIDDHLKRLGEFVQTLDNVDKFEVLPYHTMGEFKWRELGIPYPLAGVKPPTPERVKNAKDIMKTESYTEYLKRIQN
3C8F Chain:A ((2-237))
--------VIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWD--THGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDP----VIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKVMF-----
General information:
TITO was launched using:
RESULT:
Template:
3C8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127210 for 1902 contacts (-66.9/contact) +
2D Compatibility (PS) -25640 + (NN) -15221 + (LL) 1772
1D Compatibility (HY) -22800 + (ID) 6300
Total energy: -195399.0 ( -102.73 by residue)
QMean score : 0.620
(partial model without unconserved sides chains):
PDB file :
Tito_3C8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C8F-query.scw
PDB file :
Tito_Scwrl_3C8F.pdb
: