Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSRQNSKLIQAFIAIILFFSLGLVIKYWPDTVIAFDQNIQESVRGQLPNLSTRFFKLITVIGNTVSQIAIAIMSVTFCYLKKWYPQARFIAVNAIISGICILSLKLIFQRVRPTLTHLVFAGGYSFPSGHSMGTFMIFGSIIILLQYYM--PKSIWKLLCQGILGLLIFLIGL--SRIYLGVHFPTDVLAGFILAYGILNLTAYIFLAKDWLKKVK
4PX7 Chain:A ((149-229))
--------------------------------------------------------------------------------------------------------------------SHWQKETGFAFPSGHTM-----FAASWALLAVGLLWPRR--RTLTIAIL--LVWATGVMGSRLLLGMHWPRDLVVATLISWALVAVATWLAQRICGPLTPP
General information:
TITO was launched using:
RESULT:
Template:
4PX7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54663 for 464 contacts (-117.8/contact) +
2D Compatibility (PS) -7713 + (NN) -424 + (LL) 12048
1D Compatibility (HY) -8800 + (ID) 1200
Total energy: -60752.0 ( -130.93 by residue)
QMean score : 0.045
(partial model without unconserved sides chains):
PDB file :
Tito_4PX7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PX7-query.scw
PDB file :
Tito_Scwrl_4PX7.pdb
: