Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLDKFLVECGLGSRTQVKLILKKKQISVNGNSETSPKVQVDEYRDEIKYNGTLVSY-EKFVYYMLHKPKGVISATDDPSHKTVLDLLDKTARDKAVFPVGRLDIDTTGLLLITNNGELAHKMLSPKKHVDKCYEAKISGIMTEDDILAFDKGIILKDF--TCLPALLEIVEVNQVKKQSLVKITIKEGKFHQVKRMVAACGKEVLELKRLRMGNLQLDKQLESGQWRRLTIKEIEKLEKYMQ
1VIO Chain:A ((3-232))
LRLDKFIAENVGLTRSQATKAIRQSAVKINGEIVKSGSVQISQ-EDEIYFEDELLTWIEEGQYFMLNKPQGCVCSND--DYPTIYQFFDYPLAGK-LHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLADPVEENYSAACAEGILLRGEKEPTKPAKLEILDDYNVN------LTISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESLEEGEYRPLTQSEIEKLV----
General information:
TITO was launched using:
RESULT:
Template:
1VIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106644 for 1712 contacts (-62.3/contact) +
2D Compatibility (PS) -23950 + (NN) -5926 + (LL) 1076
1D Compatibility (HY) -17200 + (ID) 4400
Total energy: -157044.0 ( -91.73 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_1VIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VIO-query.scw
PDB file :
Tito_Scwrl_1VIO.pdb
: