Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIIGLTGGIASGKSTVTKIIRESGFKVIDADQVVHKLQAKGGKLYQALLEWLGPEILDADGELDRPKLSQMIFANPDNMKTSARLQNSIIRQELACQRDQLKQTEEIFFVDIPLLIEEKYIKWFDEIWLVFVDKEKQLQRLMARNNYSREEAELRLSHQMPLTDKKSFASLIINNNGDLITLKEQILDALQRL
2IF2 Chain:A ((2-192))
--KRIGLTGNIGCGKSTVAQMFRELGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKLRKLEEITHRALYKEIEKITKNLSE-DTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIKRGM-SEEDFERRWKKQMPIEEKVKYADYVIDNSGSIEETYKQVKKVYEEL
General information:
TITO was launched using:
RESULT:
Template:
2IF2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87234 for 1411 contacts (-61.8/contact) +
2D Compatibility (PS) -21328 + (NN) -11864 + (LL) 404
1D Compatibility (HY) -15600 + (ID) 2950
Total energy: -138572.0 ( -98.21 by residue)
QMean score : 0.634
(partial model without unconserved sides chains):
PDB file :
Tito_2IF2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IF2-query.scw
PDB file :
Tito_Scwrl_2IF2.pdb
: