Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGTMILIAIIALFVIWLIVAYNSLVRSRMHTKESWSQIDVQLKRRNDLIPNLIETVKGYAAYEGKTLEKIAELRAQVAKANTPAEAM-------TASNELTRQLSSILAVAENYPDLKANNSFVKLQEELTNTENKISYSRQLYNTTTSNYNVKLETFPSNIVGKLFGFKPSQFLETPEEEKEVPKVSFDF |
3SDP Chain:A ((29-114)) | ------------------------------------------KHHNTYVVNLNNLVPGTPEFEGKTLEEIVK-SSSGGIFNNAAQVWNHTFYWNCLSPDAGGQPTGALADAIN----AAFGSFDKFKEEFTKTSVGTFGSGWAWLVKADGSLALCSTIGAGAPLTSGDTPLLTCDVWEHAYYIDYRNLRPK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SDP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 15822 for 418 contacts (37.9/contact) +
2D Compatibility (PS) -8191 + (NN) -734 + (LL) 5212
1D Compatibility (HY) -1600 + (ID) 1450
Total energy: 9059.0 ( 21.67 by residue)
QMean score : -0.034
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