Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTKIIGVLGLGIFGQTLAQELSNFEQDVIAIDSNPENVQAVAEVVTKAAIGDITDLAFLKHIGISDCDTVIIATGNSLESSVLAVMHCKKLGVPQVIAKARNLVYEEVLYEIGADLVISPERESGQNVAANLMRNKITDVFQIESDISVIEFKIPKSWVGKTVEQLNIRHKFDLNLIGIRKAKNKPIDTEVPINSPLEEGIILVAIANSDAFQRYDYLGYFN
4J90 Chain:A ((6-184))
--NKQFAVIGLGRFGGSICKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPEKDMGVKIAQSLSDENVLNYIDLSDEYSIVELLATRKLDSKSIIDLNVRAKYGCTILAIKHHGDICLSPAPEDIIREQDCLVIMGHKKDIKRFENEGM----
General information:
TITO was launched using:
RESULT:
Template:
4J90.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110545 for 1277 contacts (-86.6/contact) +
2D Compatibility (PS) -19009 + (NN) -4005 + (LL) 464
1D Compatibility (HY) -16800 + (ID) 2800
Total energy: -152695.0 ( -119.57 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_4J90.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J90-query.scw
PDB file :
Tito_Scwrl_4J90.pdb
: